miRBase entry: chi-mir-140

Stem-loop chi-mir-140


Accession
MI0030627
Description
Capra hircus chi-mir-140 precursor miRNA
Gene family
MIPF0000085; mir-140

Literature search
6 open access papers mention chi-mir-140
(11 sentences)

Sequence

ugugugucugucucucuguguccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucuACCACAGGGUAGAACCACGGACaggauaccggggcacccucugcaucg
((((.(..((((((...((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).))))))..).).)))...

Structure
---   - u uc      ucu        -  A             A       u  c  c 
   ugu g g  ugucuc   guguccug cC GUGGUUUUACCCU UGGUAGg ua gu  
   ||| | |  ||||||   |||||||| || ||||||||||||| ||||||| || || a
   acg c c  acgggg   cauaggaC GG CACCAAGAUGGGA ACCAucu gu cg  
gcu   u u cc      --c        A  -             C       u  -  u 


Annotation confidence Not enough data
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Genome context
chr18: 40199402-40199515 [+]

Database links

Mature chi-miR-140-5p

Accession MIMAT0035960
Description Capra hircus chi-miR-140-5p mature miRNA
Sequence 27 - CAGUGGUUUUACCCUAUGGUAG - 48
Evidence experimental
Illumina [1]

Mature chi-miR-140-3p

Accession MIMAT0035961
Description Capra hircus chi-miR-140-3p mature miRNA
Sequence 67 - ACCACAGGGUAGAACCACGGAC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40