miRBase entry: chi-mir-143

Stem-loop chi-mir-143


Accession
MI0030629
Description
Capra hircus chi-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143

Literature search
15 open access papers mention chi-mir-143
(45 sentences)

Sequence

gcguccugucucccagccugaGGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUCGggaagggagaaguuguucuacagc
........((((((..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..)))))).(((((...)))))

Structure
------gcguccug      ag      G         G      U  -  ag 
              ucuccc  ccugaG UGCAGUGCU CAUCUC GG uc  u
              ||||||  |||||| ||||||||| |||||| || ||   
              agaggg  ggGCUC AUGUCACGA GUAGAG cu ag  u
cgacaucuuguuga      aa      G         A      U  g  gg 


Annotation confidence Not enough data
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Genome context
chr7: 60508524-60508624 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-143-5p

Accession MIMAT0035963
Description Capra hircus chi-miR-143-5p mature miRNA
Sequence 22 - GGUGCAGUGCUGCAUCUCUGG - 42
Evidence experimental
Illumina [1]

Mature chi-miR-143-3p

Accession MIMAT0035964
Description Capra hircus chi-miR-143-3p mature miRNA
Sequence 56 - UGAGAUGAAGCACUGUAGCUCG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40