Stem-loop chi-mir-144

Accession

MI0030630

Description

Capra hircus chi-mir-144 precursor miRNA

Literature search

35 open access papers mention chi-mir-144
(170 sentences)

Sequence

105157 reads, 321.0 reads per million, 36 experiments

gggcccugacugGGAUAUCAUCAUAUACUGUAAGUUugcgaugagauacUACAGUAUAGAUGAUGUACUcguccgggugcucccagcucuggagcc
..((((.(((.(((((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).))))(((((.......))))).

Structure

----------------gg    u   u   -        A         -A    gc 
                  gccc gac gGG AUAUCAUC UAUACUGUA  GUUu  g
                  |||| ||| ||| |||||||| |||||||||  ||||   
                  uggg cug cUC UGUAGUAG AUAUGACAU  uaga  a
ccgaggucucgacccucg    c   -   A        -         ca    gu 

Annotation confidence High

Genome context

chr19: 20538924-20539019 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-144

Mature chi-miR-144-5p

• Accession: MIMAT0035965
• Description: Capra hircus chi-miR-144-5p mature miRNA
• Sequence: 13 - GGAUAUCAUCAUAUACUGUAAGUU - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-144-3p

• Accession: MIMAT0035966
• Description: Capra hircus chi-miR-144-3p mature miRNA
• Sequence: 50 - UACAGUAUAGAUGAUGUACU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40