Stem-loop sequence chi-mir-148a

Accession

MI0030636 (change log)

Description

Capra hircus miR-148a stem-loop

Gene family

MIPF0000056; mir-148

Literature search

6 open access papers mention chi-mir-148a
(21 sentences)

Stem-loop

   caguuuggucuuuu              -  -a    cc    -   aa 
5'               gaggcaaaguucug ag  cacu  gacu cug  u
                 |||||||||||||| ||  ||||  |||| |||  a
3'               cucuguuucaagac uc  guga  cuga gau  u
   -----------gau              a  ac    --    a   ag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr4: 71633508-71633592 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030636

Mature sequence chi-miR-148a-5p

• Accession: MIMAT0035976
• Sequence: 20 - aaaguucugagacacuccgacu - 41
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-148a-3p

• Accession: MIMAT0035977
• Sequence: 58 - ucagugcacuacagaacuuugu - 79
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).