miRBase entry: chi-mir-148a

Stem-loop chi-mir-148a


Accession
MI0030636
Description
Capra hircus chi-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
6 open access papers mention chi-mir-148a
(21 sentences)

Sequence

caguuuggucuuuugaggcAAAGUUCUGAGACACUCCGACUcugaauaugauagaagUCAGUGCACUACAGAACUUUGUcucuag
..............((((((((((((((((.((((..(((((((.......))).))))))))..)).))))))))))))))...

Structure
caguuuggucuuuu              -  -A    CC    -   aa 
              gaggcAAAGUUCUG AG  CACU  GACU cug  u
              |||||||||||||| ||  ||||  |||| |||  a
              cucUGUUUCAAGAC UC  GUGA  CUga gau  u
-----------gau              A  AC    --    a   ag 


Annotation confidence Not enough data
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Genome context
chr4: 71633508-71633592 [+]

Database links

Mature chi-miR-148a-5p

Accession MIMAT0035976
Description Capra hircus chi-miR-148a-5p mature miRNA
Sequence 20 - AAAGUUCUGAGACACUCCGACU - 41
Evidence experimental
Illumina [1]

Mature chi-miR-148a-3p

Accession MIMAT0035977
Description Capra hircus chi-miR-148a-3p mature miRNA
Sequence 58 - UCAGUGCACUACAGAACUUUGU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40