miRBase entry: chi-mir-154a

Stem-loop chi-mir-154a


Accession
MI0030641
Description
Capra hircus chi-mir-154a precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
5 open access papers mention chi-mir-154a
(9 sentences)

Sequence

ugcuaaucugcgggacuugaagaUAGGUUAUCCGUGUAGCCUucgcuuuacuugugacgAAUCAUACACGGUUCACCUACUuuucaguaccaaaucccgccuugg
..((((...((((((.((((((((((((...(((((((...(((((.........).))))...)))))))...))))).))))))).......)))))).))))

Structure
ug    ucu      ------c       -     UAU       GCC    - uuu 
  cuaa   gcggga       uugaaga UAGGU   CCGUGUA   Uucg c   a
  ||||   ||||||       ||||||| |||||   |||||||   |||| |   c
  gguu   cgcccu       gacuuuU AUCCA   GGCACAU   AAgc g   u
--    --c      aaaccau       C     CUU       ACU    a ugu 


Annotation confidence Not enough data
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Genome context
chr21: 67137564-67137668 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from chi-mir-154a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-154a-5p

Accession MIMAT0035984
Description Capra hircus chi-miR-154a-5p mature miRNA
Sequence 24 - UAGGUUAUCCGUGUAGCCU - 42
Evidence experimental
Illumina [1]

Mature chi-miR-154a-3p

Accession MIMAT0035985
Description Capra hircus chi-miR-154a-3p mature miRNA
Sequence 60 - AAUCAUACACGGUUCACCUACU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40