Stem-loop chi-mir-15a

Accession

MI0030644

Description

Capra hircus chi-mir-15a precursor miRNA

Literature search

71 open access papers mention chi-mir-15a
(425 sentences)

Sequence

302416 reads, 931.0 reads per million, 36 experiments

accuuggaguaaagUAGCAGCACAUAAUGGUUUGUggauuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCaaaaauacaaggaucugaucuuc
.(((((.......(..((((((((..((((((((((.............))))))))))..))))))))..).......)))))...........

Structure

----------a     gaguaaa UA        UA          gauuu 
           ccuug       g  GCAGCACA  AUGGUUUGUg     u
           |||||       |  ||||||||  ||||||||||     g
           ggaac       C  CGUCGUGU  UACCGGACgu     a
cuucuagucua     auaaaaa UC        UA          ggaaa 

Annotation confidence High

Genome context

chr12: 18725978-18726072 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-15a

Mature chi-miR-15a-5p

• Accession: MIMAT0035990
• Description: Capra hircus chi-miR-15a-5p mature miRNA
• Sequence: 15 - UAGCAGCACAUAAUGGUUUGU - 35
• Evidence: experimental ; Illumina [1]

Mature chi-miR-15a-3p

• Accession: MIMAT0035991
• Description: Capra hircus chi-miR-15a-3p mature miRNA
• Sequence: 52 - CAGGCCAUAUUGUGCUGCCUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40