miRBase entry: chi-mir-15a

Stem-loop chi-mir-15a


Accession
MI0030644
Description
Capra hircus chi-mir-15a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
5 open access papers mention chi-mir-15a
(57 sentences)

Sequence

accuuggaguaaagUAGCAGCACAUAAUGGUUUGUGGauuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCAaaaauacaaggaucugaucuuc
.(((((.......(..((((((((..((((((((((.............))))))))))..))))))))..).......)))))...........

Structure
----------a     gaguaaa UA        UA          Gauuu 
           ccuug       g  GCAGCACA  AUGGUUUGUG     u
           |||||       |  ||||||||  ||||||||||     g
           ggaac       C  CGUCGUGU  UACCGGACgu     a
cuucuagucua     auaaaaA UC        UA          ggaaa 


Annotation confidence Not enough data
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Genome context
chr12: 18725978-18726072 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-15a-5p

Accession MIMAT0035990
Description Capra hircus chi-miR-15a-5p mature miRNA
Sequence 15 - UAGCAGCACAUAAUGGUUUGUGG - 37
Evidence experimental
Illumina [1]

Mature chi-miR-15a-3p

Accession MIMAT0035991
Description Capra hircus chi-miR-15a-3p mature miRNA
Sequence 52 - CAGGCCAUAUUGUGCUGCCUCA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40