miRBase entry: chi-mir-15b

Stem-loop chi-mir-15b


Accession
MI0030645
Description
Capra hircus chi-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
6 open access papers mention chi-mir-15b
(8 sentences)

Sequence

uugaggccuuaaaguacugUAGCAGCACAUCAUGGUUUACAuacuacagucaagaugCGAAUCAUUAUUUGCUGCUCUagaaauuuaaggaaauucau
.((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...)))).

Structure
u    --g       gua   U       C  C       A   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
 acuu   ggaauuu   gaU UCGUCGU UA UACUAAG gua ga  u
u    aaa       aaa   C       U  U       C   -  ac 


Annotation confidence Not enough data
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Genome context
chr1: 109436450-109436547 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-15b-5p

Accession MIMAT0035992
Description Capra hircus chi-miR-15b-5p mature miRNA
Sequence 20 - UAGCAGCACAUCAUGGUUUACA - 41
Evidence experimental
Illumina [1]

Mature chi-miR-15b-3p

Accession MIMAT0035993
Description Capra hircus chi-miR-15b-3p mature miRNA
Sequence 58 - CGAAUCAUUAUUUGCUGCUCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40