miRBase entry: chi-mir-16a

Stem-loop chi-mir-16a


Accession
MI0030646
Description
Capra hircus chi-mir-16a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
6 open access papers mention chi-mir-16a
(13 sentences)

Sequence

gucagcagugccuUAGCAGCACGUAAAUAUUGGAGuuaagauucuaAAAUUAUCUCCAGUAUUAACUGUGCUGCugaaguaagguugac
((((((..(((.((((((((((((.((((((((((.(((..........))).)))))))))).)).)))))))))).)))..))))))

Structure
      ag   c          -  A          u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGGAG uaa    c
||||||  ||| |||||||||| || |||||||||| |||     
caguug  aug aguCGUCGUG CA UUAUGACCUC AUU    u
      ga   a          U  A          U   AAAa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr12: 18725843-18725931 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-16a-5p

Accession MIMAT0035994
Description Capra hircus chi-miR-16a-5p mature miRNA
Sequence 14 - UAGCAGCACGUAAAUAUUGGAG - 35
Evidence experimental
Illumina [1]

Mature chi-miR-16a-3p

Accession MIMAT0035995
Description Capra hircus chi-miR-16a-3p mature miRNA
Sequence 47 - AAAUUAUCUCCAGUAUUAACUGUGCUGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40