miRBase entry: chi-mir-16b

Stem-loop chi-mir-16b


Accession
MI0030647
Description
Capra hircus chi-mir-16b precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
7 open access papers mention chi-mir-16b
(14 sentences)

Sequence

cugacauacuuguuccgcucUAGCAGCACGUAAAUAUUGGGGuaguaaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUUagcgugacaggga
........((((((.((((..(((((((((..((((((((..(((((.......)))))....))))))))..)))))))))..)))).))))))..

Structure
cugacaua      c    cU         UA        --GG     aa 
        cuuguu cgcu  AGCAGCACG  AAUAUUGG    uagua  a
        |||||| ||||  |||||||||  ||||||||    |||||  u
        ggacag gcga  UCGUCGUGU  UUAUAACC    auuau  a
------ag      u    UU         UA        Acaa     aa 


Annotation confidence Not enough data
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Genome context
chr1: 109436307-109436403 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-16b-5p

Accession MIMAT0035996
Description Capra hircus chi-miR-16b-5p mature miRNA
Sequence 21 - UAGCAGCACGUAAAUAUUGGGG - 42
Evidence experimental
Illumina [1]

Mature chi-miR-16b-3p

Accession MIMAT0035997
Description Capra hircus chi-miR-16b-3p mature miRNA
Sequence 63 - ACCAAUAUUAUUGUGCUGCUUU - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40