miRBase entry: chi-mir-181b

Stem-loop chi-mir-181b


Accession
MI0030650
Description
Capra hircus chi-mir-181b precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
6 open access papers mention chi-mir-181b
(10 sentences)

Sequence

cugauggcugcacucAACAUUCAUUGCUGUCGGUGGGUuugacuuugaaucaaCUCACUGAUCAAUGAAUGCAAacugcggaccaaaca
....((((((((.....(((((((((..(((((((((((.((.......)))))))))))))))))))))).....))))).)))....

Structure
cuga   -     cucAA         CU           u  cu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUu ga  u
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     GUAAGUAAC  UAGUCACUCaa cu  g
acaa   a     caAAC         --           -  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr11: 98560989-98561077 [+]

Database links

Mature chi-miR-181b-5p

Accession MIMAT0036001
Description Capra hircus chi-miR-181b-5p mature miRNA
Sequence 16 - AACAUUCAUUGCUGUCGGUGGGU - 38
Evidence experimental
Illumina [1]

Mature chi-miR-181b-3p

Accession MIMAT0036002
Description Capra hircus chi-miR-181b-3p mature miRNA
Sequence 54 - CUCACUGAUCAAUGAAUGCAA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40