Stem-loop chi-mir-188

Accession

MI0030659

Description

Capra hircus chi-mir-188 precursor miRNA

Gene family

MIPF0000113; mir-188

Literature search

1 open access papers mention chi-mir-188
(5 sentences)

Sequence

uucccugcucccucucucaCAUCCCUUGCAUGGUGGAGGGugagcuuucugaaaacccCUCCCACAUGCAGGGUUUGCAggauggugagccucggcuuuucuugcucucu
......((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).))))...(((.......)))....

Structure

--------------uucccu    -  uc   ca  UC         GU      -ugag u 
                    gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
                    |||| ||  |||  ||  |||||||||  ||||||     | u
                    cgag gg  agg  GU  GGGACGUAC  CCUCcc     g c
ucucucguucuuuucggcuc    u  -u   AC  UU         AC      caaaa u 

Annotation confidence Not enough data

Genome context

chrX: 82619878-82619987 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-188

Mature chi-miR-188-5p

• Accession: MIMAT0036013
• Description: Capra hircus chi-miR-188-5p mature miRNA
• Sequence: 20 - CAUCCCUUGCAUGGUGGAGGG - 40
• Evidence: experimental ; Illumina [1]

Mature chi-miR-188-3p

• Accession: MIMAT0036014
• Description: Capra hircus chi-miR-188-3p mature miRNA
• Sequence: 59 - CUCCCACAUGCAGGGUUUGCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40