Stem-loop chi-mir-195

Accession

MI0030670

Description

Capra hircus chi-mir-195 precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

1 open access papers mention chi-mir-195
(1 sentences)

Sequence

cccagcuccccuggcucUAGCAGCACAGAAAUGUUGGuacugggaagagagccugCCAAUAUUGGCUGUGCUGCUCcaggcagggugguga
..((.(..(((((.((..((((((((((.((((((((((..((........))))))))))))..))))))))))..)).))))).).)).

Structure

cc  g uc     g  cU          -A          cu  gaa 
  ca c  cccug cu  AGCAGCACAG  AAUGUUGGua  gg   g
  || |  ||||| ||  ||||||||||  ||||||||||  ||    
  gu g  gggac ga  UCGUCGUGUC  UUAUAACCgu  cc   a
-a  g -u     g  cC          GG          --  gag 

Annotation confidence Not enough data

Genome context

chr19: 27447708-27447798 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-195

Mature chi-miR-195-5p

• Accession: MIMAT0036030
• Description: Capra hircus chi-miR-195-5p mature miRNA
• Sequence: 18 - UAGCAGCACAGAAAUGUUGG - 37
• Evidence: experimental ; Illumina [1]

Mature chi-miR-195-3p

• Accession: MIMAT0036031
• Description: Capra hircus chi-miR-195-3p mature miRNA
• Sequence: 56 - CCAAUAUUGGCUGUGCUGCUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40