miRBase entry: chi-mir-196a

Stem-loop chi-mir-196a


Accession
MI0030671
Description
Capra hircus chi-mir-196a precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
6 open access papers mention chi-mir-196a
(11 sentences)

Sequence

ugaacuggaacugcugagugaauUAGGUAGUUUCAUGUUGUUGGgccuggauuucugaacacaacgacauuaaaccacccgacucacggcaguuacugcucc
......(((((((((..((((.((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)).))))))))))).)).....

Structure
ugaacu  -       ga    a  A   A    C         - gc ugg 
      gg aacugcu  guga uU GGU GUUU AUGUUGUUG G  c   a
      || |||||||  |||| || ||| |||| ||||||||| |  |   u
      uc uugacgg  cacu ag cca caaa uacagcaac c  g   u
-ccucg  a       --    c  c   c    u         a aa ucu 


Annotation confidence Not enough data
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Genome context
chr19: 38976510-38976611 [+]

Database links

Mature chi-miR-196a

Accession MIMAT0036032
Description Capra hircus chi-miR-196a mature miRNA
Sequence 24 - UAGGUAGUUUCAUGUUGUUGG - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40