miRBase entry: chi-mir-199c

Stem-loop chi-mir-199c


Accession
MI0030676
Description
Capra hircus chi-mir-199c precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
1 open access papers mention chi-mir-199c
(2 sentences)

Sequence

ccuccacuccgucuaCCCAGUGUUUAGACUAUCUGUUCaggacucccaaauuguACAGUAGUCUGCACAUUGGUUaggcugggcugggugagacccu
..(((((((.(((((.(((((((.(((((((.((((.(((..........))).))))))))))).))))))).))))).))).)))).........

Structure
-------cc    -   c     C       U       U    U   gacu 
         ucca cuc gucua CCAGUGU UAGACUA CUGU Cag    c
         |||| ||| ||||| ||||||| ||||||| |||| |||     
         gggu ggg cggaU GGUUACA GUCUGAU GACA guu    c
ucccagagu    c   u     U       C       -    u   aaac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature chi-miR-199c-5p

Accession MIMAT0036040
Description Capra hircus chi-miR-199c-5p mature miRNA
Sequence 16 - CCCAGUGUUUAGACUAUCUGUUC - 38
Evidence experimental
Illumina [1]

Mature chi-miR-199c-3p

Accession MIMAT0036041
Description Capra hircus chi-miR-199c-3p mature miRNA
Sequence 55 - ACAGUAGUCUGCACAUUGGUU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40