Stem-loop chi-mir-200a

Accession

MI0030679

Description

Capra hircus chi-mir-200a precursor miRNA

Literature search

12 open access papers mention chi-mir-200a
(21 sentences)

Sequence

gggccucuguggacaucuuaccggacagugcuggauuucucagcucaacucUAACACUGUCUGGUAACGAUGuucaaaggugacccac
((((.(((.(((((((((((((((((((((.((((.((........)).)))).))))))))))))).)))))))).))).).)))..

Structure

--   - c   g        -             c    u  cuc 
  ggg c ucu uggacauc uuaccggacagug ugga uu   a
  ||| | ||| |||||||| ||||||||||||| |||| ||    
  ccc g gga acuuGUAG AAUGGUCUGUCAC AUcu aa   g
ca   a u   a        C             A    c  cuc 

Annotation confidence Not enough data

Genome context

AJPT02077529.1: 1264-1351 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-200a

Mature chi-miR-200a

• Accession: MIMAT0036045
• Description: Capra hircus chi-miR-200a mature miRNA
• Sequence: 52 - UAACACUGUCUGGUAACGAUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40