miRBase entry: chi-mir-200a

Stem-loop chi-mir-200a


Accession
MI0030679
Description
Capra hircus chi-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
12 open access papers mention chi-mir-200a
(21 sentences)

Sequence

gggccucuguggacaucuuaccggacagugcuggauuucucagcucaacucUAACACUGUCUGGUAACGAUGuucaaaggugacccac
((((.(((.(((((((((((((((((((((.((((.((........)).)))).))))))))))))).)))))))).))).).)))..

Structure
--   - c   g        -             c    u  cuc 
  ggg c ucu uggacauc uuaccggacagug ugga uu   a
  ||| | ||| |||||||| ||||||||||||| |||| ||    
  ccc g gga acuuGUAG AAUGGUCUGUCAC AUcu aa   g
ca   a u   a        C             A    c  cuc 


Annotation confidence Not enough data
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Genome context
AJPT02077529.1: 1264-1351 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-200a

Accession MIMAT0036045
Description Capra hircus chi-miR-200a mature miRNA
Sequence 52 - UAACACUGUCUGGUAACGAUG - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40