miRBase entry: chi-mir-200b

Stem-loop chi-mir-200b


Accession
MI0030680
Description
Capra hircus chi-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
9 open access papers mention chi-mir-200b
(16 sentences)

Sequence

gccaucgccaucuuacugggcagcauuggauggugucuggucucUAAUACUGCCUGGUAAUGAUGAcgcuggggcccugc
.(((.((.(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).)).)))........

Structure
-------g   u  c    -           c      u  ug 
        cca cg cauc uuacugggcag auugga gg  u
        ||| || |||| ||||||||||| |||||| ||  c
        ggu gc GUAG AAUGGUCCGUC UAAUcu cu  u
cgucccgg   c  A    U           A      -  gg 


Annotation confidence Not enough data
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Genome context
chr16: 51960891-51960970 [-]

Database links

Mature chi-miR-200b

Accession MIMAT0036046
Description Capra hircus chi-miR-200b mature miRNA
Sequence 45 - UAAUACUGCCUGGUAAUGAUGA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40