Stem-loop sequence chi-mir-20a

Accession

MI0030686 (change log)

Description

Capra hircus miR-20a stem-loop

Gene family

MIPF0000001; mir-17

Literature search

2 open access papers mention chi-mir-20a
(2 sentences)

Stem-loop

   g  u  c  --g      ucu    c   -a                 g   -  uu 
5'  ug ga gu   acagcu   guag acu  aagugcuuauagugcag uag ug  u
    || || ||   ||||||   |||| |||  ||||||||||||||||| ||| ||   
3'  ac cu ca   ugucga   cguc uga  uucacgaguauuacguc auc au  a
   g  -  -  aga      --u    a   aa                 -   u  ug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr12: 66729906-66730012 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-20a

• chi-mir-17: chr12: 66729474-66729557 [+]
• chi-mir-18a: chr12: 66729611-66729699 [+]
• chi-mir-19a: chr12: 66729756-66729837 [+]
• chi-mir-20a: chr12: 66729906-66730012 [+]
• chi-mir-19b: chr12: 66730053-66730139 [+]
• chi-mir-92a: chr12: 66730161-66730259 [+]

Database links

• miRBase Tracker:MI0030686

Mature sequence chi-miR-20a-5p

• Accession: MIMAT0036054
• Sequence: 27 - uaaagugcuuauagugcagguag - 49
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-20a-3p

• Accession: MIMAT0036055
• Sequence: 63 - acugcauuaugagcacuuaaa - 83
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).