miRBase entry: chi-mir-20b

Stem-loop chi-mir-20b

Accession

MI0030687

Description

Capra hircus chi-mir-20b precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention chi-mir-20b
(1 sentences)

Sequence

aguacCAAAGUGCUCACAGUGCAGGUAGuuuuggcaacauucuacuguagugugggcacuuccaguacucuugga
(((((..(((((((((((.(((((.(((...((....))..)))))))).)))))))))))...)))))......

Structure

------     -CA           G     G   uuu  g 
      aguac   AAGUGCUCACA UGCAG UAG   ug c
      |||||   ||||||||||| ||||| |||   ||  
      ucaug   uucacgggugu auguc auc   ac a
agguuc     acc           g     -   -uu  a

Annotation confidence Not enough data

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Genome context

chrX: 40075091-40075165 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-20b

Accession	MIMAT0036056
Description	Capra hircus chi-miR-20b mature miRNA
Sequence	6 - CAAAGUGCUCACAGUGCAGGUAG - 28
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40