Stem-loop sequence chi-mir-214

Accession

MI0030689 (change log)

Description

Capra hircus miR-214 stem-loop

Gene family

MIPF0000062; mir-214

Literature search

4 open access papers mention chi-mir-214
(10 sentences)

Stem-loop

   ggccu      acgga           u          aca            aacau 
5'      ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
        ||||||     ||||||||||| ||||||||||   ||||||||||||     c
3'      ccgacc     caacaguacac gacggacaga   ggacgacauguc     g
   --agu      -----           u          cac            cacuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr16: 39501613-39501724 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-214

• chi-mir-199a: chr16: 39507404-39507513 [-]
• chi-mir-214: chr16: 39501613-39501724 [-]

Database links

• miRBase Tracker:MI0030689

Mature sequence chi-miR-214-5p

• Accession: MIMAT0036058
• Sequence: 30 - ugccugucuacacuugcugugc - 51
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-214-3p

• Accession: MIMAT0036059
• Sequence: 70 - uacagcaggcacagacaggc - 89
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).