miRBase entry: chi-mir-215

Stem-loop chi-mir-215


Accession
MI0030690
Description
Capra hircus chi-mir-215 precursor miRNA
Gene family
MIPF0000063; mir-192

Literature search
2 open access papers mention chi-mir-215
(2 sentences)

Sequence

auucagaaaugguguacaggaaaAUGACCUAUGAAUUGACAGACaaugggacuaagucugucugucauuucuguaggccaauauucuguauaucucugcgacuucaa
...((((...(((((((((((...((.((((((((.(((((((((....(((...)))))))))))).))).))))).))...))))))))))))))).........

Structure
------auu    aau           aaA  A     -   U         augg   u 
         caga   gguguacagga   UG CCUAU GAA UGACAGACa    gac  
         ||||   |||||||||||   || ||||| ||| |||||||||    ||| a
         gucu   cuauaugucuu   ac ggaug cuu acugucugu    cug  
aacuucagc    ---           aua  c     u   u         ----   a 


Annotation confidence Not enough data
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Genome context
chr16: 23073850-23073956 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-215
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-215-5p

Accession MIMAT0036060
Description Capra hircus chi-miR-215-5p mature miRNA
Sequence 24 - AUGACCUAUGAAUUGACAGAC - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40