miRBase entry: chi-mir-21

Stem-loop chi-mir-21


Accession
MI0030691
Description
Capra hircus chi-mir-21 precursor miRNA
Gene family
MIPF0000060; mir-21

Literature search
17 open access papers mention chi-mir-21
(71 sentences)

Sequence

uguaccaccuugucgggUAGCUUAUCAGACUGAUGUUGACuguugaaucucauggCAACAGCAGUCGAUGGGCUGUcugacauuuugguauc
.((((((...((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))...)))))).

Structure
u      ccu                A     A     A    u  a 
 guacca   ugucgggUAGCUUAUC GACUG UGUUG Cugu ga  
 ||||||   |||||||||||||||| ||||| ||||| |||| || u
 uauggu   acagucUGUCGGGUAG CUGAC ACAAC ggua cu  
c      uuu                -     G     -    -  c 


Annotation confidence Not enough data
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Genome context
chr19: 10841436-10841527 [+]

Database links

Mature chi-miR-21-5p

Accession MIMAT0036061
Description Capra hircus chi-miR-21-5p mature miRNA
Sequence 18 - UAGCUUAUCAGACUGAUGUUGAC - 40
Evidence experimental
Illumina [1]

Mature chi-miR-21-3p

Accession MIMAT0036062
Description Capra hircus chi-miR-21-3p mature miRNA
Sequence 56 - CAACAGCAGUCGAUGGGCUGU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40