Stem-loop chi-mir-222

Accession

MI0030697

Description

Capra hircus chi-mir-222 precursor miRNA

Literature search

86 open access papers mention chi-mir-222
(430 sentences)

Sequence

74050 reads, 226.0 reads per million, 36 experiments

cagcugcuggaauguguagguacccucaauggCUCAGUAGCCAGUGUAGAUCCUGucuuuuguaaucaguAGCUACAUCUGGCUACUGGGUCUCUgauggcaucuucuaccu
.(.((((........)))).).((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).))............

Structure

cagcugcuggaauguguaggua  c   au              -     AUC   ucuu 
                      cc uca  ggCUCAGUAGCCAG UGUAG   CUG    u
                      || |||  |||||||||||||| |||||   |||    u
                      gg agU  CUGGGUCAUCGGUC ACAUC   gac    g
----------uccaucuucuac  u   CU              U     GAu   uaau 

Annotation confidence Medium

Genome context

chrX: 93117133-93117244 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-222

Mature chi-miR-222-5p

• Accession: MIMAT0058957
• Description: Capra hircus chi-miR-222-5p mature miRNA
• Sequence: 33 - CUCAGUAGCCAGUGUAGAUCCUG - 55
• Evidence: experimental ; Illumina [1]

Mature chi-miR-222-3p

• Accession: MIMAT0036070
• Description: Capra hircus chi-miR-222-3p mature miRNA
• Sequence: 71 - AGCUACAUCUGGCUACUGGGUCUCU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40