miRBase entry: chi-mir-23b

Stem-loop chi-mir-23b


Accession
MI0030712
Description
Capra hircus chi-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
2 open access papers mention chi-mir-23b
(4 sentences)

Sequence

gugcucuggcugcuUGGGUUCCUGGCAUGCUGAUUUgugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCacgcaaccacgacc
....(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).))..

Structure
gugc  -   c   u   --          -  C      gugacu 
    uc ugg ugc UGG  GUUCCUGGCA UG UGAUUU      u
    || ||| ||| |||  |||||||||| || ||||||       
    ag acc acg aCC  UAGGGACCGU AC ACUAaa      a
--cc  c   a   c   AU          U  -      auuaga 


Annotation confidence Not enough data
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Genome context
chr8: 82818597-82818683 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-23b-5p

Accession MIMAT0036088
Description Capra hircus chi-miR-23b-5p mature miRNA
Sequence 15 - UGGGUUCCUGGCAUGCUGAUUU - 36
Evidence experimental
Illumina [1]

Mature chi-miR-23b-3p

Accession MIMAT0036089
Description Capra hircus chi-miR-23b-3p mature miRNA
Sequence 53 - AUCACAUUGCCAGGGAUUACC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40