miRBase entry: chi-mir-27b

Stem-loop chi-mir-27b


Accession
MI0030723
Description
Capra hircus chi-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
10 open access papers mention chi-mir-27b
(85 sentences)

Sequence

gcgacgaccucucugacgaggugcAGAGCUUAGCUGAUUGGUGAACagugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaagguga
......((((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).))))..

Structure
gcgacg    -    gacg                 G    G       ugac   u 
      accu cucu    aggugcAGAGCUUAGCU AUUG UGAACag    ugg  
      |||| ||||    ||||||||||||||||| |||| |||||||    ||| u
      ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
----ag    a    --ag                 -    -       --uc   u 


Annotation confidence Not enough data
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Genome context
chr8: 82818815-82818918 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-27b-5p

Accession MIMAT0036107
Description Capra hircus chi-miR-27b-5p mature miRNA
Sequence 25 - AGAGCUUAGCUGAUUGGUGAAC - 46
Evidence experimental
Illumina [1]

Mature chi-miR-27b-3p

Accession MIMAT0036108
Description Capra hircus chi-miR-27b-3p mature miRNA
Sequence 67 - UUCACAGUGGCUAAGUUCUGC - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40