Stem-loop chi-mir-30b

Accession

MI0030732

Description

Capra hircus chi-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

6 open access papers mention chi-mir-30b
(13 sentences)

Sequence

accaaguuuccaguucaUGUAAACAUCCUACACUCAGCUguaacacuugagucggCUGGGAGGUGGAUGUUUACUUCagcugacuugga
.((((((...(((((...((((((((((.((.((((((((..((......))))))))))..))))))))))))...))))))))))).

Structure

a      uuc     caU          U  -A        ua  ac 
 ccaagu   caguu   GUAAACAUCC AC  CUCAGCUg  ac  u
 ||||||   |||||   |||||||||| ||  ||||||||  ||   
 gguuca   gucga   CAUUUGUAGG UG  GGGUCggc  ug  u
a      ---     CUU          -  GA        --  ag 

Annotation confidence Not enough data

Genome context

chr14: 17702995-17703083 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-30b

Mature chi-miR-30b-5p

• Accession: MIMAT0036123
• Description: Capra hircus chi-miR-30b-5p mature miRNA
• Sequence: 18 - UGUAAACAUCCUACACUCAGCU - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-30b-3p

• Accession: MIMAT0036124
• Description: Capra hircus chi-miR-30b-3p mature miRNA
• Sequence: 56 - CUGGGAGGUGGAUGUUUACUUC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40