miRBase entry: chi-mir-30e

Stem-loop chi-mir-30e


Accession
MI0030735
Description
Capra hircus chi-mir-30e precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
6 open access papers mention chi-mir-30e
(69 sentences)

Sequence

uucugggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGCUguaaggcguugcaaggagCUUUCAGUCGGAUGUUUACAGcggcaggcugccacggucauccc
..(((((((((((..(((.((((((((((((..(((((((((((.....((...))....))))))))))))))))))))))).))))))))))).))).......

Structure
-----uu   -        uu   a            UU           guaag  g 
       cug ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGCU     gc  
       ||| ||||||||  ||| ||||||||||||  |||||||||||     || u
       ggc ccgucgga  cgg GACAUUUGUAGG  CUGACUUUCga     cg  
cccuacu   a        --   c            --           -ggaa  u 


Annotation confidence Not enough data
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Genome context
chr3: 107747145-107747250 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-30e-5p

Accession MIMAT0036128
Description Capra hircus chi-miR-30e-5p mature miRNA
Sequence 21 - UGUAAACAUCCUUGACUGGAAGCU - 44
Evidence experimental
Illumina [1]

Mature chi-miR-30e-3p

Accession MIMAT0036129
Description Capra hircus chi-miR-30e-3p mature miRNA
Sequence 63 - CUUUCAGUCGGAUGUUUACAG - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40