miRBase entry: chi-mir-329a

Stem-loop chi-mir-329a


Accession
MI0030743
Description
Capra hircus chi-mir-329a precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
1 open access papers mention chi-mir-329a
(1 sentences)

Sequence

caguguAAUUGGUGGUACUUGAGGAgagguuuucuaggucuccguuucuuucaugaggaugaAACACACCUGGUUAACCUUUuuuccaguaucagaucccaccuugg
..(((..(((..(((((((.(((((((((((..((((((....(((((.(((....))).)))))..))))))..))))))))))).))))))))))..))).....

Structure
---ca   uA   GG       U           uu      cucc     u   a 
     gug  AUU  UGGUACU GAGGAgagguu  cuaggu    guuuc uuc u
     |||  |||  ||||||| |||||||||||  ||||||    ||||| |||  
     cac  uag  acuauga cuuuUUUCCAA  GGUCCA    CAAag agg g
gguuc   cc   --       c           UU      --CA     u   a 


Annotation confidence Not enough data
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Genome context
chr21: 67105386-67105492 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from chi-mir-329a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-329a-5p

Accession MIMAT0036140
Description Capra hircus chi-miR-329a-5p mature miRNA
Sequence 7 - AAUUGGUGGUACUUGAGGA - 25
Evidence experimental
Illumina [1]

Mature chi-miR-329a-3p

Accession MIMAT0036141
Description Capra hircus chi-miR-329a-3p mature miRNA
Sequence 63 - AACACACCUGGUUAACCUUU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40