miRBase entry: chi-mir-378

Stem-loop chi-mir-378


Accession
MI0030773
Description
Capra hircus chi-mir-378 precursor miRNA
Gene family
MIPF0000168; mir-378

Literature search
7 open access papers mention chi-mir-378
(14 sentences)

Sequence

gcagccagugggugacagagccacccagggCUCCUGACUCCAGGUCCUGUGUguuaccucgaaauagcACUGGACUUGGAGUCAGAAGGCcugaguggaaucgccuuccc
.......(.((((((.....((((.((((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))).))))..)))))).)..

Structure
gcagcca u      cagag    c    g  C              U    gu acc 
       g ggguga     ccac cagg CU CUGACUCCAGGUCC GUGU  u   u
       | ||||||     |||| |||| || |||||||||||||| ||||  |    
       c uccgcu     ggug gucC GA GACUGAGGUUCAGG CAcg  a   c
-----cc u      ---aa    a    G  A              U    au aag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 60783373-60783482 [+]

Database links

Mature chi-miR-378-5p

Accession MIMAT0036193
Description Capra hircus chi-miR-378-5p mature miRNA
Sequence 31 - CUCCUGACUCCAGGUCCUGUGU - 52
Evidence experimental
Illumina [1]

Mature chi-miR-378-3p

Accession MIMAT0036194
Description Capra hircus chi-miR-378-3p mature miRNA
Sequence 69 - ACUGGACUUGGAGUCAGAAGGC - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40