miRBase entry: chi-mir-380

Stem-loop chi-mir-380


Accession
MI0030775
Description
Capra hircus chi-mir-380 precursor miRNA
Gene family
MIPF0000126; mir-379

Literature search
2 open access papers mention chi-mir-380
(3 sentences)

Sequence

ccuucccacgguaccugaaaagAUGGUUGACCACAGAACAUGCGCugucucuaugucgUAUGUAAUGUGGUCCACGUCUucucaauaucaaauucagucgcag
.........((((..(((.((((((...(((((((..((((((((.........).)))))))..)))))))..)))))).))).))))..............

Structure
-----ccuucccac    cc   a      GUU       GA       - ugu 
              ggua  uga aagAUG   GACCACA  ACAUGCG C   c
              ||||  ||| ||||||   |||||||  ||||||| |   u
              cuau  acu uUCUGC   CUGGUGU  UGUAUgc g   c
gacgcugacuuaaa    -a   c      -AC       AA       u uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr21: 67103397-67103499 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from chi-mir-380
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-380-5p

Accession MIMAT0036197
Description Capra hircus chi-miR-380-5p mature miRNA
Sequence 23 - AUGGUUGACCACAGAACAUGCGC - 45
Evidence experimental
Illumina [1]

Mature chi-miR-380-3p

Accession MIMAT0036198
Description Capra hircus chi-miR-380-3p mature miRNA
Sequence 59 - UAUGUAAUGUGGUCCACGUCU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40