miRBase entry: chi-mir-381

Stem-loop chi-mir-381


Accession
MI0030776
Description
Capra hircus chi-mir-381 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention chi-mir-381
(4 sentences)

Sequence

agcgauggaccugcccaaugcuacuacuguuugguacuuaaagcgagguugcccuuuguauauucgguuuuuugacguagaaUAUACAAGGGCAAGCUCUCUGUgaguaucaaaccuuggacccaguc
((((.(((......))).)))).(((..((((((((((((.((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)).))))))))))))..)))........

Structure
agcgauggaccugcccaaugcua   cu            a  c   g        u        --g   u 
                       cua  guuugguacuua ag gag uugcccuu guauauuc   guu u
                       |||  |||||||||||| || ||| |||||||| ||||||||   |||  
                       ggu  caaacuaugagU UC CUC AACGGGAA CAUAUaag   cag u
---------------cugaccca   uc            G  U   G        -        aug   u 


Annotation confidence Not enough data
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Genome context
chr21: 67121597-67121724 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from chi-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-381

Accession MIMAT0036199
Description Capra hircus chi-miR-381 mature miRNA
Sequence 83 - UAUACAAGGGCAAGCUCUCUGU - 104
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40