Stem-loop chi-mir-382

Accession

MI0030777

Description

Capra hircus chi-mir-382 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention chi-mir-382
(2 sentences)

Sequence

cccugcucugucuugccucugccuuucugugguacuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuuaugacgAAUCAUUCACGGACAACACUUuuuucaguaccaaauacuaccucuaag
....((........)).............(((((((.(((((((.(((((((((((..(((((((.........).))))))..)))))))))))..))))))))))))))...............

Structure

cccugcucugucuugccucugccuuucug       u       -A           UG      - uuu 
                             ugguacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
                             ||||||| |||||||  |||||||||||  |||||| |   c
                             accauga cuuuuUU  CAACAGGCACU  CUAAgc g   u
--------------gaaucuccaucauaa       -       CA           UA      a uau 

Annotation confidence Not enough data

Genome context

chr21: 67130720-67130845 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from chi-mir-382

Mature chi-miR-382-5p

• Accession: MIMAT0036200
• Description: Capra hircus chi-miR-382-5p mature miRNA
• Sequence: 43 - GAAGUUGUUCGUGGUGGAUUCG - 64
• Evidence: experimental ; Illumina [1]

Mature chi-miR-382-3p

• Accession: MIMAT0036201
• Description: Capra hircus chi-miR-382-3p mature miRNA
• Sequence: 79 - AAUCAUUCACGGACAACACUU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40