Stem-loop chi-mir-411b

Accession

MI0030785

Description

Capra hircus chi-mir-411b precursor miRNA

Gene family

MIPF0000126; mir-379

Sequence

ccauuucgcuguauguggagagaUGGUCGACCAUAAAACGUACGUgugcuuuaugacgUAUGUCACAUGGUCCACUAAUucucagcaucagucagccugagg
.......((((.((((.(((((.((((.((((((...((((((((..........))))))))...)))))).)))).))))).))))))))..........

Structure

---ccauuuc    u    g     a    C      AAA        gugc 
          gcug augu gagag UGGU GACCAU   ACGUACGU    u
          |||| |||| ||||| |||| ||||||   ||||||||     
          ugac uacg cucuU AUCA CUGGUA   UGUAUgca    u
ggaguccgac    -    a     A    C      CAC        guau 

Annotation confidence Not enough data

Genome context

chr21: 67103557-67103658 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-411b

Mature chi-miR-411b-5p

• Accession: MIMAT0036215
• Description: Capra hircus chi-miR-411b-5p mature miRNA
• Sequence: 24 - UGGUCGACCAUAAAACGUACGU - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-411b-3p

• Accession: MIMAT0036216
• Description: Capra hircus chi-miR-411b-3p mature miRNA
• Sequence: 59 - UAUGUCACAUGGUCCACUAAU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40