miRBase entry: chi-mir-424

Stem-loop chi-mir-424


Accession
MI0030789
Description
Capra hircus chi-mir-424 precursor miRNA
Gene family
MIPF0000164; mir-322

Literature search
5 open access papers mention chi-mir-424
(17 sentences)

Sequence

ucguugacuccaaggggauaCAGCAGCAAUUCAUGUUUUGAagugcuuuaaacgguuCAAAACGUGAGGCGCUGCUAUacccccuugcgaggaaguaggaagguggggu
.......((((((((((.((.((((((..(((((((((((((.((.......)).)))))))))))))..)))))).)).))))))).)))..................

Structure
-----------ucguuga   -       a  C      AA             g  cu 
                  cuc caagggg ua AGCAGC  UUCAUGUUUUGAa ug  u
                  ||| ||||||| || ||||||  ||||||||||||| ||  u
                  gag guucccc aU UCGUCG  GAGUGCAAAACuu gc  a
ugggguggaaggaugaag   c       c  A      CG             g  aa 


Annotation confidence Not enough data
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Genome context
chrX: 40346458-40346566 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-424
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-424-5p

Accession MIMAT0036222
Description Capra hircus chi-miR-424-5p mature miRNA
Sequence 21 - CAGCAGCAAUUCAUGUUUUGA - 41
Evidence experimental
Illumina [1]

Mature chi-miR-424-3p

Accession MIMAT0036223
Description Capra hircus chi-miR-424-3p mature miRNA
Sequence 58 - CAAAACGUGAGGCGCUGCUAU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40