Stem-loop chi-mir-425

Accession

MI0030790

Description

Capra hircus chi-mir-425 precursor miRNA

Gene family

MIPF0000242; mir-425

Sequence

aaagugcuuuggAAUGACACGAUCACUCCCGUUGAgugggcacccaagaagcCAUCGGGAAUGUCGUGUCCGCCcagugcucuuuc
((((.((.((((...(((((((.((.(((((....((((............))))))))).)))))))))...)))).)).)))).

Structure

-    u  u    AAU       U  C     UUGA    gcacc 
 aaag gc uugg   GACACGA CA UCCCG    gugg     c
 |||| || ||||   ||||||| || |||||    ||||      
 uuuc cg gacC   CUGUGCU GU AGGGC    UACc     a
c    u  u    CGC       -  A     ----    gaaga 

Annotation confidence Not enough data

Genome context

chr22: 52694380-52694465 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-425

Mature chi-miR-425-5p

• Accession: MIMAT0036224
• Description: Capra hircus chi-miR-425-5p mature miRNA
• Sequence: 13 - AAUGACACGAUCACUCCCGUUGA - 35
• Evidence: experimental ; Illumina [1]

Mature chi-miR-425-3p

• Accession: MIMAT0036225
• Description: Capra hircus chi-miR-425-3p mature miRNA
• Sequence: 53 - CAUCGGGAAUGUCGUGUCCGCC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40