miRBase entry: chi-mir-449c

Stem-loop chi-mir-449c


Accession
MI0030796
Description
Capra hircus chi-mir-449c precursor miRNA
Gene family
MIPF0000133; mir-449

Literature search
1 open access papers mention chi-mir-449c
(1 sentences)

Sequence

aagcuugaaugugucagguAGGCAGUGCAUCUCUAGCUggcuguuaauauuucauuuuaacaguugcuaguugcacuccccgcuguugcauucauaaucuu
.....(((((((..(((...((.((((((...(((((.(((((((((.........)))))))))))))).))))))))...)))..))))))).......

Structure
--aagcu       gu   guA  C      UCU     U         uau 
       ugaaugu  cag   GG AGUGCA   CUAGC ggcuguuaa   u
       |||||||  |||   || ||||||   ||||| |||||||||   u
       acuuacg  guc   cc ucacgu   gaucg uugacaauu   c
uucuaau       uu   gcc  -      --u     -         uua 


Annotation confidence Not enough data
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Genome context
chr20: 24945519-24945619 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-449c

Accession MIMAT0036234
Description Capra hircus chi-miR-449c mature miRNA
Sequence 20 - AGGCAGUGCAUCUCUAGCU - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40