miRBase entry: chi-mir-485

Stem-loop chi-mir-485


Accession
MI0030802
Description
Capra hircus chi-mir-485 precursor miRNA
Gene family
MIPF0000201; mir-485

Literature search
2 open access papers mention chi-mir-485
(3 sentences)

Sequence

caaguguccacuuaugguacuugaagAGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgAGUCAUACACGGCUCUCCUCUCUuuuagugucaaauucugccucggagggcuu
((((((.(((....)))))))))((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))...............((((....))))..

Structure
------caaguguccacuuaugguacuug        CU       -    A    auuc 
                             aagAGAGG  GGCCGUG AUGA UUCg    a
                             ||||||||  ||||||| |||| ||||    u
                             uUCUCUCC  UCGGCAC UACU GAgc    c
uucgggaggcuccgucuuaaacugugauu        UC       A    -    gaaa 


Annotation confidence Not enough data
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Genome context
chr21: 67131798-67131912 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from chi-mir-485
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-485-5p

Accession MIMAT0036244
Description Capra hircus chi-miR-485-5p mature miRNA
Sequence 27 - AGAGGCUGGCCGUGAUGAAUUC - 48
Evidence experimental
Illumina [1]

Mature chi-miR-485-3p

Accession MIMAT0036245
Description Capra hircus chi-miR-485-3p mature miRNA
Sequence 63 - AGUCAUACACGGCUCUCCUCUCU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40