miRBase entry: chi-mir-499

Stem-loop chi-mir-499


Accession
MI0030812
Description
Capra hircus chi-mir-499 precursor miRNA
Gene family
MIPF0000173; mir-499

Literature search
3 open access papers mention chi-mir-499
(3 sentences)

Sequence

ucuguccccugcacccggggcgggcggcugUUAAGACUUGCAGUGAUGUUUaacuccucuccacguGAACAUCACAGCAAGUCUGUGCugcuucccguccccacgcugccugggcagggu
((((.(((..(((.(.((((((((.(((.((..((((((((.((((((((((.............)))))))))).))))))))..)).))).))))))))...).)))..)))))))..

Structure
--    u   cu   c --c        c   u  UA        A          acucc 
  ucug ccc  gca c   ggggcggg ggc gU  AGACUUGC GUGAUGUUUa     u
  |||| |||  ||| |   |||||||| ||| ||  |||||||| ||||||||||     c
  ggac ggg  cgu g   cccugccc ucg CG  UCUGAACG CACUACAAGu     u
ug    -   uc   c cac        u   u  UG        A          gcacc 


Annotation confidence Not enough data
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Genome context
chr13: 65701240-65701359 [+]

Database links

Mature chi-miR-499-5p

Accession MIMAT0036261
Description Capra hircus chi-miR-499-5p mature miRNA
Sequence 31 - UUAAGACUUGCAGUGAUGUUU - 51
Evidence experimental
Illumina [1]

Mature chi-miR-499-3p

Accession MIMAT0036262
Description Capra hircus chi-miR-499-3p mature miRNA
Sequence 67 - GAACAUCACAGCAAGUCUGUGC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40