Stem-loop sequence chi-mir-500

Accession

MI0030813 (change log)

Description

Capra hircus miR-500 stem-loop

Gene family

MIPF0000139; mir-500

Stem-loop

         c     -u         uac ug    agag   uuu 
5' gcuccc cucuc  aauccuugc   c  ggug    ugc   c
   |||||| |||||  |||||||||   |  ||||    |||   u
3' cgaggg gagag  uuaggaacg   g  ccac    acg   g
         a     uc         --- gu    -gua   uaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chrX: 82603133-82603216 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-500

• chi-mir-502b: chrX: 82604898-82604980 [-]
• chi-mir-362: chrX: 82604414-82604511 [-]
• chi-mir-500: chrX: 82603133-82603216 [-]
• chi-mir-660: chrX: 82601027-82601104 [-]
• chi-mir-502a: chrX: 82599100-82599184 [-]

Database links

• miRBase Tracker:MI0030813

Mature sequence chi-miR-500-5p

• Accession: MIMAT0036263
• Sequence: 13 - uaauccuugcuaccugggugaga - 35
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-500-3p

• Accession: MIMAT0036264
• Sequence: 52 - augcaccugggcaaggauucu - 72
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).