Stem-loop sequence chi-mir-502a

Accession

MI0030814 (change log)

Description

Capra hircus miR-502a stem-loop

Gene family

MIPF0000139; mir-500

Literature search

1 open access papers mention chi-mir-502a
(1 sentences)

Stem-loop

   u        -    -        cuc  ug     uag   -  u 
5'  gcccaccc cucu aauccuug   uc  ggugc   ugc ug c
    |||||||| |||| ||||||||   ||  |||||   ||| ||  
3'  cggguggg gaga uuaggaac   ag  ccacg   gcg ac u
   u        a    c        ---  gu     -ua   u  c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chrX: 82599100-82599184 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-502a

• chi-mir-502b: chrX: 82604898-82604980 [-]
• chi-mir-362: chrX: 82604414-82604511 [-]
• chi-mir-500: chrX: 82603133-82603216 [-]
• chi-mir-660: chrX: 82601027-82601104 [-]
• chi-mir-502a: chrX: 82599100-82599184 [-]

Database links

• miRBase Tracker:MI0030814

Mature sequence chi-miR-502a

• Accession: MIMAT0036265
• Sequence: 52 - augcaccuggacaaggauuc - 71
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).