miRBase entry: chi-mir-502b

Stem-loop chi-mir-502b

Accession

MI0030815

Description

Capra hircus chi-mir-502b precursor miRNA

Gene family

MIPF0000139; mir-500

Sequence

gcuccccucucUAAUUCUUGCUCCCCAGGUGAGagugcuuugugaaugcaAUCCACCUGGGCAAGGAUUCUGAAugugagagc
((((.((..((.(((((((((...(((((((.((.(((.........))).))))))))))))))))))..))..).).))))

Structure

    c - uc  -U         UCC       A  g   uuu 
gcuc c c  uc  AAUUCUUGC   CCAGGUG Ga ugc   g
|||| | |  ||  |||||||||   ||||||| || |||   u
cgag g g  AG  UUAGGAACG   GGUCCAC CU acg   g
    a u uA  UC         ---       -  A   uaa

Annotation confidence Not enough data

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Genome context

chrX: 82604898-82604980 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-502b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-502b-5p

Accession	MIMAT0036266
Description	Capra hircus chi-miR-502b-5p mature miRNA
Sequence	12 - UAAUUCUUGCUCCCCAGGUGAG - 33
Evidence	experimental Illumina [1]

Mature chi-miR-502b-3p

Accession	MIMAT0036267
Description	Capra hircus chi-miR-502b-3p mature miRNA
Sequence	51 - AUCCACCUGGGCAAGGAUUCUGAA - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40