miRBase entry: chi-mir-671

Stem-loop chi-mir-671


Accession
MI0030830
Description
Capra hircus chi-mir-671 precursor miRNA
Gene family
MIPF0000358; mir-671

Literature search
2 open access papers mention chi-mir-671
(4 sentences)

Sequence

gccgccgaccuggcaggccaggaagaggAGGAAGCCCUGGAGGGGCUGGAGGugauggauguuuuccUCCGGUUCUCAGGGCUCCACCuuuuccgggccguggagccagggcuggugcaga
((.((((.((((((.((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).)))).....))))))..))))))...

Structure
---  c    -a      ----a    a        A   A      GA           u  ug 
   gc gccg  ccuggc     ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGG ga  g
   || ||||  ||||||     |||| |||||||| ||| ||||||  ||||||||||| ||  a
   cg uggu  ggaccg     ccgg ccuuuuCC CCU CGGGAC  UCUUGGCCUcc uu  u
aga  -    cg      aggug    g        A   -      --           u  ug 


Annotation confidence Not enough data
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Genome context
chr4: 116586507-116586627 [+]

Database links

Mature chi-miR-671-5p

Accession MIMAT0036286
Description Capra hircus chi-miR-671-5p mature miRNA
Sequence 29 - AGGAAGCCCUGGAGGGGCUGGAGG - 52
Evidence experimental
Illumina [1]

Mature chi-miR-671-3p

Accession MIMAT0036287
Description Capra hircus chi-miR-671-3p mature miRNA
Sequence 68 - UCCGGUUCUCAGGGCUCCACC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40