Stem-loop chi-mir-92a

Accession

MI0030839

Description

Capra hircus chi-mir-92a precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

1 open access papers mention chi-mir-92a
(2 sentences)

Sequence

ggaaaaucaaaccccuuucuacacAGGUUGGGAUCAGUUGCAAUGCUguguuucuguauggUAUUGCACUUGUCCCGGCCUGUugaguuugguggggau
...........((((...((..((((((((((((.(((.(((((((((((......)))))))))))))).))))))))))))..))......))))..

Structure

ggaaaaucaaa    ---uuu  ac            C   U           uu 
           cccc      cu  acAGGUUGGGAU AGU GCAAUGCUgug  u
           ||||      ||  |||||||||||| ||| |||||||||||   
           gggg      ga  UGUCCGGCCCUG UCA CGUUAUgguau  c
---------ua    ugguuu  gu            U   -           gu 

Annotation confidence Not enough data

Genome context

chr12: 66730161-66730259 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from chi-mir-92a

Mature chi-miR-92a-5p

• Accession: MIMAT0036302
• Description: Capra hircus chi-miR-92a-5p mature miRNA
• Sequence: 25 - AGGUUGGGAUCAGUUGCAAUGCU - 47
• Evidence: experimental ; Illumina [1]

Mature chi-miR-92a-3p

• Accession: MIMAT0036303
• Description: Capra hircus chi-miR-92a-3p mature miRNA
• Sequence: 62 - UAUUGCACUUGUCCCGGCCUGU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40