miRBase entry: chi-mir-99b

Stem-loop chi-mir-99b


Accession
MI0030846
Description
Capra hircus chi-mir-99b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
3 open access papers mention chi-mir-99b
(6 sentences)

Sequence

ggcaccCACCCGUAGAACCGACCUUGCGgggccuucgccgcacaCAAGCUCGUGUCUGUGGGUCcguguc
(((((..(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))..)))))

Structure
     cC         AC   C    --C g   c 
ggcac  ACCCGUAGA  CGA CUUG   G ggc u
|||||  |||||||||  ||| ||||   | |||  
cugug  UGGGUGUCU  GCU GAAC   c ccg u
     cC         GU   C    aca g   c 


Annotation confidence Not enough data
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Genome context
chr18: 62075592-62075661 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-99b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-99b-5p

Accession MIMAT0036314
Description Capra hircus chi-miR-99b-5p mature miRNA
Sequence 7 - CACCCGUAGAACCGACCUUGCG - 28
Evidence experimental
Illumina [1]

Mature chi-miR-99b-3p

Accession MIMAT0036315
Description Capra hircus chi-miR-99b-3p mature miRNA
Sequence 45 - CAAGCUCGUGUCUGUGGGUC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40