Stem-loop ocu-mir-371

Accession

MI0030993

Description

Oryctolagus cuniculus ocu-mir-371 precursor miRNA

Gene family

MIPF0000068; mir-290

Sequence

cucugccugcgggACUCAAACCGUGGGGGCACUUUcuggcgucuggaguagAGUGCCGCCAGGGUUUGAGUGUugccgguggg
..(((((.((((.(((((((((.(((.((((((((((((...)))))...))))))).))).))))))))).)))).))))).

Structure

cu     u    g         G   G       ---     c 
  cugcc gcgg ACUCAAACC UGG GGCACUU   Ucugg  
  ||||| |||| ||||||||| ||| |||||||   ||||| g
  ggugg cguU UGAGUUUGG ACC CCGUGAg   agguc  
-g     c    G         G   G       aug     u 

Annotation confidence Not enough data

Genome context

GL018924.1: 216428-216510 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ocu-mir-371

Mature ocu-miR-371-5p

• Accession: MIMAT0036327
• Description: Oryctolagus cuniculus ocu-miR-371-5p mature miRNA
• Sequence: 14 - ACUCAAACCGUGGGGGCACUUU - 35
• Evidence: experimental ; SOLiD [1]

Mature ocu-miR-371-3p

• Accession: MIMAT0036328
• Description: Oryctolagus cuniculus ocu-miR-371-3p mature miRNA
• Sequence: 52 - AGUGCCGCCAGGGUUUGAGUGU - 73
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 23426804
   Discovery of pluripotency-associated microRNAs in rabbit preimplantation embryos and embryonic stem-like cells
   "Maraghechi P, Hiripi L, Toth G, Bontovics B, Bosze Z, Gocza E"
   "Reproduction (2013) 145:421-437


2. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344