miRBase entry: gma-MIR5780c

Stem-loop gma-MIR5780c


Accession
MI0031014
Description
Glycine max gma-MIR5780c precursor miRNA
Gene family
MIPF0001918; MIR5780


Sequence

uguuguucugagucucuaauauauuaaaaguuuuguuuugggccccuaccgccaauuaagugaugacaugacaucauuccaaugacugauauauauuggaagagcuguugagauggugccacaccaucacuaaaugaugacaaggaucccaaacaaaacuUUUAAUAUAUCAGGGACUUGGAacaau
.((((((((((((((((.((((((((((((((((((((.(((..(((.......(((.(((((((...((.(((((((.(((((.((...............)).))))).))))))).))...))))))).))).......)))..))))))))))))))))))))))).))))))))))))))))

Structure
u                a                    u   cc   accgcca   a       aca  a       c     a  gauaua 
 guuguucugagucucu auauauuaaaaguuuuguuu ggg  ccu       auu agugaug   ug caucauu caaug cu      u
 |||||||||||||||| |||||||||||||||||||| |||  |||       ||| |||||||   || ||||||| ||||| ||      a
 uaacaAGGUUCAGGGA UAUAUAAUUUucaaaacaaa ccc  gga       uaa ucacuac   ac gugguag guugu ga      u
-                C                    -   ua   acaguag   a       cac  c       a     c  gaaggu 


Annotation confidence Not enough data
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Genome context
chr14: 16753071-16753257 [-]

Database links

Mature gma-miR5780c

Accession MIMAT0036352
Description Glycine max gma-miR5780c mature miRNA
Sequence 161 - UUUAAUAUAUCAGGGACUUGGA - 182
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153