miRBase entry: gma-MIR9746g

Stem-loop gma-MIR9746g


Accession
MI0031034
Description
Glycine max gma-MIR9746g precursor miRNA
Gene family
MIPF0001884; MIR9746


Sequence

augguuauucaauugagauucaagcacuuuucuauguggcuuuaagguguguuuuauugcaugagcaagauguugaaugcaggggguucauaaaacaaauugucaaacuuuugcauaccuuaagcucucaucugagaaguuauuuuuugacggauuugaaguaacuuaacuaaauauaucaccuuaaaacagagcaguacucaucuauuguuauuacuauugcagugcaacaaauuuaauguuagaagaaugacauuaaacuuguuguguauaguauuugaguacucuucuauuuugaagcaauauaugugguuaaguuguuucaaauccaaccuaaaauaguuuagcuuaagacaugcaauuguuugacaauuuguucuauuaauucauugcauucaacauuuugcuuaagcaauuacauggaacaccuuaaauccaugaagaAAAGUGUUUGAAUCUCAAUUAGAUaauca
.((((((((.(((((((((((((((((((((((.(((((.((((((((((.....(((((.(((((((((((((((((((((.(((((.(((.(((((((((((((((..((((((..(((((((((((....)))((((((((((..(..(((((((((((((((((((((.((((((..(.((((((.((((.((((((((...........((((((.((...(((((((.((((((((((......)))))))))).)))))))))))))))..)))))))).)))).)))))).)..)))))).)))))))))))))))))))))..)..))))))))))))))))))..))))))..))))))))))))))).))).))))).))))))))))))))))))))).)))))........)))))))))).))))).))))))))))))))))))))))).))))))))

Structure
a        c                       a     c          ---guuuu     a                     g     c   a               uu      ac        cucaucugag          uu ac                     a      ca c      c    c        ucuauuguuau      u  agu       a          ga 
 ugguuauu aauugagauucaagcacuuuucu ugugg uuuaaggugu        auugc ugagcaagauguugaaugcag ggguu aua aacaaauugucaaac  uugcau  cuuaagcu          aaguuauuuu  g  ggauuugaaguaacuuaacua auauau  c uuaaaa agag aguacuca           uacuau gc   gcaacaa uuuaauguua  a
 |||||||| ||||||||||||||||||||||| ||||| ||||||||||        ||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||  ||||||  ||||||||          ||||||||||  |  ||||||||||||||||||||| ||||||  | |||||| |||| ||||||||           |||||| ||   ||||||| ||||||||||   
 acuaaUAG UUAACUCUAAGUUUGUGAAAaga guacc aaauuccaca        uaacg auucguuuuacaacuuacguu cuuaa uau uuguuuaacaguuug  aacgua  gaauucga          uuugauaaaa  c  ccuaaacuuuguugaauuggu uauaua  g aguuuu ucuu ucaugagu           augaua ug   uguuguu aaauuacagu  g
-        A                       a     u          agguacau     a                     a     u   c               uu      ca        ----------          uc aa                     g      ac a      a    c        ---------uu      -  ---       c          aa 


Annotation confidence Not enough data
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Genome context
chr3: 2905626-2906098 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR9746g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR9746g

Accession MIMAT0036372
Description Glycine max gma-miR9746g mature miRNA
Sequence 445 - AAAGUGUUUGAAUCUCAAUUAGAU - 468
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153