Stem-loop gma-MIR5670b

Accession

MI0031055

Description

Glycine max gma-MIR5670b precursor miRNA

Gene family

MIPF0001978; MIR5670

Literature search

1 open access papers mention gma-MIR5670b
(3 sentences)

Sequence

uucaacgaagcacauguggugugauguaagggaaauaccaugacugaauuuaguugaacccuauuaacaauauucacugugaugcuugacacuguaguucccguaaggaugucaagcaucacaugaauauuguuagagggguuuaacuaaauucaguucuaguauuucccuCACAUCAUACCAUAUUUGCUUCauuga
.((((.((((((.((((((((((((((.((((((((((...(((((((((((((((((((((.(((((((((((((.((((((((((((((.......(((.....)))))))))))))))))))))))))))))).)))))))))))))))))))))...)))))))))).)))))))))))))).)))))).))))

Structure

u    c      c              a          cau                     a             c              cuguagu   c 
 ucaa gaagca auguggugugaugu agggaaauac   gacugaauuuaguugaacccu uuaacaauauuca ugugaugcuugaca       ucc g
 |||| |||||| |||||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||| ||||||||||||||       ||| u
 aguu CUUCGU UAUACCAUACUACA ucccuuuaug   uugacuuaaaucaauuugggg gauuguuauaagu acacuacgaacugu       agg a
-    a      U              C          auc                     a             -              -------   a 

Annotation confidence Not enough data

Genome context

chr2: 10713946-10714143 [-]

Mature gma-miR5670b

• Accession: MIMAT0036393
• Description: Glycine max gma-miR5670b mature miRNA
• Sequence: 172 - CACAUCAUACCAUAUUUGCUUC - 193
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153