miRBase entry: tch-mir-539

Stem-loop tch-mir-539

Accession

MI0031162

Description

Tupaia chinensis tch-mir-539 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

agagauuguccucgguguguucgcuuuauuuaugaugaAUCAUACAAGGACAAUUUCUUU
((((((((((((..((((((((((.........).)))).))))).))))))))))))..

Structure

--            cg     -    - uuu 
  agagauuguccu  gugug uucg c   a
  ||||||||||||  ||||| |||| |   u
  UCUUUAACAGGA  CAUAC Aagu g   u
UU            -A     U    a uau

Annotation confidence Not enough data

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Genome context

KB321140.1: 4907685-4907744 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from tch-mir-539

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tch-miR-539-3p

Accession	MIMAT0036505
Description	Tupaia chinensis tch-miR-539-3p mature miRNA
Sequence	39 - AUCAUACAAGGACAAUUUCUUU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 24314655
microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
"Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
"Virology (2014) 448:247-254