Stem-loop tch-mir-542

Accession

MI0031283

Description

Tupaia chinensis tch-mir-542 precursor miRNA

Gene family

MIPF0000185; mir-542

Sequence

ucggggaucaucaugucacgagauaccacugcgcgcuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.............)))))))))...))))..))))..

Structure

--    gg    uca         auacc 
  ucgg  auca   ugucacgag     a
  ||||  ||||   |||||||||     c
  AGUC  UAGU   ACAGUGUuc     u
AA    AA    UAG         gcgcg 

Annotation confidence Not enough data

Genome context

KB370352.1: 2043115-2043173 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tch-mir-542

Mature tch-miR-542-3p

• Accession: MIMAT0036613
• Description: Tupaia chinensis tch-miR-542-3p mature miRNA
• Sequence: 38 - UGUGACAGAUUGAUAACUGAAA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254