miRBase entry: oha-mir-130c

Stem-loop oha-mir-130c


Accession
MI0031337
Description
Ophiophagus hannah oha-mir-130c precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

uugggcacggccccugcccgagGCUCUUUUCACAUUGUGCUACUgagcccaaccaagCAGUGCAAUGUAAAAAGGGCAUuggguugguggccacag
........((((((.((((((.((((((((.((((((((((.((...........)).)))))))))).)))))))).)))))).)).))))....

Structure
uugggcac    -  u      g        C          A  gagc 
        ggcc cc gcccga GCUCUUUU ACAUUGUGCU CU    c
        |||| || |||||| |||||||| |||||||||| ||    c
        ccgg gg uggguU CGGGAAAA UGUAACGUGA ga    a
----gaca    u  u      A        A          C  acca 


Annotation confidence Not enough data
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Genome context
AZIM01000945.1: 91158-91253 [-]

Database links

Mature oha-miR-130c-5p

Accession MIMAT0036691
Description Ophiophagus hannah oha-miR-130c-5p mature miRNA
Sequence 23 - GCUCUUUUCACAUUGUGCUACU - 44
Evidence not_experimental

Mature oha-miR-130c-3p

Accession MIMAT0036692
Description Ophiophagus hannah oha-miR-130c-3p mature miRNA
Sequence 58 - CAGUGCAAUGUAAAAAGGGCAU - 79
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656